NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001316

Scaffold Ga0209296_1001316


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001316 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19258
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (9.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026863Metagenome / Metatranscriptome196Y
F036664Metagenome169Y
F039634Metagenome / Metatranscriptome163Y
F053807Metagenome / Metatranscriptome140Y
F070891Metagenome / Metatranscriptome122N
F078631Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100131616F070891N/AMKKLYEILFEGKKPEEQPLKLEIRLKSTATPEEQLEINEWYRHVYNSLQRN
Ga0209296_100131619F053807N/AMSYSLVYSARPNSTHTIQVYEPNQQDSPYVRGLKACSKLIDAIFAAKANFTPSKRLHIKGRKYMYISSDTYQLLVRVKNF
Ga0209296_100131621F078631N/AMMIQLNPMIPIVRKTDGMKGYAFLVIDYSQEHYILFVCAMDNGDIWALDNREISVQNNPSLGRYLNTKQHDKE
Ga0209296_100131634F039634N/AMKLNFKAYNTLPTKKSHWWQVVLFPTVSLMNNIQKHDPYVALNVEYLFWSLTTIISYGKKAQHPYITR
Ga0209296_10013164F026863N/AMENREVKIERIPLDKLIDTLVDLYNKGIDYIDVVGVPGVEFDRMGIAFTKDYMTDQGKENFGEIGIDLEITSSKLTDEDLNELI
Ga0209296_100131640F036664N/AMTVKDLVEAIQSEVEWFETTEGDDLECIGIENLEGILSKYLGTPIKLTQDGDI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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