Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1001316 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19258 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (9.76%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026863 | Metagenome / Metatranscriptome | 196 | Y |
F036664 | Metagenome | 169 | Y |
F039634 | Metagenome / Metatranscriptome | 163 | Y |
F053807 | Metagenome / Metatranscriptome | 140 | Y |
F070891 | Metagenome / Metatranscriptome | 122 | N |
F078631 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100131616 | F070891 | N/A | MKKLYEILFEGKKPEEQPLKLEIRLKSTATPEEQLEINEWYRHVYNSLQRN |
Ga0209296_100131619 | F053807 | N/A | MSYSLVYSARPNSTHTIQVYEPNQQDSPYVRGLKACSKLIDAIFAAKANFTPSKRLHIKGRKYMYISSDTYQLLVRVKNF |
Ga0209296_100131621 | F078631 | N/A | MMIQLNPMIPIVRKTDGMKGYAFLVIDYSQEHYILFVCAMDNGDIWALDNREISVQNNPSLGRYLNTKQHDKE |
Ga0209296_100131634 | F039634 | N/A | MKLNFKAYNTLPTKKSHWWQVVLFPTVSLMNNIQKHDPYVALNVEYLFWSLTTIISYGKKAQHPYITR |
Ga0209296_10013164 | F026863 | N/A | MENREVKIERIPLDKLIDTLVDLYNKGIDYIDVVGVPGVEFDRMGIAFTKDYMTDQGKENFGEIGIDLEITSSKLTDEDLNELI |
Ga0209296_100131640 | F036664 | N/A | MTVKDLVEAIQSEVEWFETTEGDDLECIGIENLEGILSKYLGTPIKLTQDGDI |
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