Scaffold Ga0209296_1002950

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209296_1002950

Scaffold Ga0209296_1002950

Overview

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1002950 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11805
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047044	Metagenome / Metatranscriptome	150	N
F089886	Metagenome / Metatranscriptome	108	N
F091223	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100295014	F091223	GGAG	MPLFVVDAIQMFRTRYVIECKEAEHAADTVTMSEADQFSQMDLGERILTTKEITYEEFRRMNQAMEDGHGDGTSYQAESGSPWMGEKMIHKVVY
Ga0209296_100295017	F089886	GGAGG	MSTQTNSRARVKQDTVGENGIKFLFSQYQSATLEGFRVICKSLIEESSGKRTTKDKFIYELDRATSKDVMVTKVTNYLMAGQGLASDSIFLYYERY
Ga0209296_10029504	F047044	GGTGG	MKTFKEITAPRNYADGSLISAKLPPAYEKAKGDKNCANCGAYVPGTKYCKVWDAKVRPDYYCKKWVAIEK

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