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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1002981 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11735 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (48.57%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007359 | Metagenome / Metatranscriptome | 352 | Y |
| F010746 | Metagenome / Metatranscriptome | 299 | Y |
| F010897 | Metagenome / Metatranscriptome | 297 | Y |
| F011914 | Metagenome / Metatranscriptome | 285 | Y |
| F016115 | Metagenome / Metatranscriptome | 249 | Y |
| F026210 | Metagenome / Metatranscriptome | 198 | Y |
| F032572 | Metagenome / Metatranscriptome | 179 | N |
| F035200 | Metagenome / Metatranscriptome | 172 | Y |
| F035215 | Metagenome / Metatranscriptome | 172 | N |
| F071966 | Metagenome | 121 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100298110 | F016115 | AGGA | MVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCIDREDADKRFVQLKEKLSAYVATATMPNGEKRGRGRPRKIDLTKTESVLV |
| Ga0209296_100298114 | F010897 | N/A | MKLINSTFLCSDKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHIYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV |
| Ga0209296_100298116 | F035215 | AGGAGG | MKLRSQIVKEISDRIDEYKGLMIDHDNNQDAVNELESAVHELENLLEWINE |
| Ga0209296_100298120 | F032572 | GAG | MEMTNTYQYIENYISKPTYFCYVVDRVVNTNPYLFTGEYNKKLINKKVWVAKQVYPMCMPEQYTYFKTLKELKAALNRWGASWVRA |
| Ga0209296_100298129 | F011914 | N/A | MITNNQITALSENELTYLFYCLNTEWNSLNMGYEFDYYIMKAFKNNVIHKLLDKYSNNLTDENKGLIMQILNKLEQNK |
| Ga0209296_100298132 | F071966 | GAGG | MSLLGIEFDVKGYIFKPFYLVLGMLYFTILLALLGCLYMVLFIRNTLEIVLKDIEKNRNKYKNLK |
| Ga0209296_100298134 | F026210 | GAGG | MSNFVNANPLNYDAKYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVIDRNGTPWEWYVREEALRFVEDIGTKIG |
| Ga0209296_10029814 | F007359 | AGGA | MKLIKQNLGAHWVIGIKGKPEKIRQYHNRIYNWGGTSGNLKWMSHNFAYFWITMEKLERAMFKYVMSGVSDKLGKKFRGAKGGLKGVVMNRVKNTINNIPVEHFHKTAESQDFYSLGVISAEKLDTDS |
| Ga0209296_10029818 | F035200 | GGAGG | MTIKYIVLRDGIRVSEDMHTKMEDAEHEAEFWRKVIRSWPDGTKVTIKKIGG |
| Ga0209296_10029819 | F010746 | N/A | MTYKCAISGEAISPERVEALQVLGVPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDGGSMFDNAVALEVENDN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |