NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1004518

Scaffold Ga0209296_1004518


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1004518 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9137
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F011843Metagenome286Y
F035676Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10045182F001424GGAGMVQQVEQLYTGYPQSDKWVEDERVFCHQCSKAVEVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKIRNGWATITWSEHQCSQTGLATFPTDVKHRCHLFQAKATAVESESWWLT
Ga0209296_10045185F003662GGAGMKSKLATVVLKGQEWIVIDTDGEKDGKLFCTLMSPDGITVLHAWVNINDIVGII
Ga0209296_10045186F011843GGAMNITLLTKVRQLFNVDYVPKHINRHNQKQYIKALRILGDKWLIHQSNQIQRIQ
Ga0209296_10045187F035676GAGGMSGKKMKSNFVNNPVRLNGNCHGHRLQKCNQCLIEKPPEGGVEMSATKWLCASCWTDRITGRNLKQVRGL
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