NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1007561

Scaffold Ga0209296_1007561


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1007561 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6753
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F009888Metagenome / Metatranscriptome311N
F012219Metagenome / Metatranscriptome282Y
F024791Metagenome / Metatranscriptome204N
F058132Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10075611F058132N/AMSLSNLKQIPKDADRGILVVDLSSIAGDGAELRFREPKAADLFPDSKELQTLRVAFAEFPEAMLYQIYLLGRCYVPDQSDAAEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKDAKNDSEV
Ga0209296_10075612F024791AGGAGMPFTRTSALIGENCVVTVAFGGYQDGTPSAFTAETYTCIARSVRFSTSVNTVDVSALCDTQNKAQSTKANGSVEVEFLVDSVVGPIFFGKDGYYCQIVLTPGSLSAKTFVGVVTSTGISVANEEAVTESATLTLGANGVTTAWS
Ga0209296_10075615F009888GAGGMALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYSFGSGSVTLTKQYSAQGILSVLNPAAYPTAANIRLTISFTVSSTVRRFGPLEIEVLAP
Ga0209296_10075617F012219AGGTGGMTLQNVQIVKEPAPSTDWRVYGDIQDDEGNPLGNFGINGTSINEWWVTQDEIFQQRIVSMFQLVMAEQIANGTAE
Ga0209296_10075618F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLSDLGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFSGTQMNALKVGK
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