NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1009324

Scaffold Ga0209296_1009324


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1009324 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5962
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002935Metagenome519Y
F009685Metagenome / Metatranscriptome314Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100932411F038241GAGMLGYTESDLNEMINSVHDAKLYYIRSASNLVDQNPLVEGLLKTVDFLQGLWAEGYFD
Ga0209296_100932413F000263GAGGMNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEGLSEEAMDSMVRTECEGVLDTLVALYELTYQLSFAIGARE
Ga0209296_100932416F009685AGGAGGMQMSDQHIDAVLAEAQKLLWGGSESENIAAHNLITNLIQDRMTFQNLN
Ga0209296_10093242F002935AGGAMRNRTKGYIGNVLDGKKLAAIATKIVKAQYNNPSKLTVDNLLLIELEEKNVFGDPKYAVICSEGVGWEQDEYGCIEIPTNIGDMGLWNGRVFISVDKVKACQTIFQKDISDYIRVFGDRLDSNCSLWQSKMSVEPATILA
Ga0209296_10093245F001043AGGAGMSDYKDGFDDGYKFAREEIMERLSEIDINDIDSWILDRLCEMIEGGKL
Ga0209296_10093247F001125AGGCGGMGDRANFGFKDRKGDTVFLYGHWAGHNMLQNLADAVQIAHPRWTDESYATRICISQMIGEDWGQETGWGLQVNQLGDNEHKVPVIDWSKQTFSLMEEDLQTVVFTTDLTSFVAKYCSQLSMV
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