NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1045547

Scaffold Ga0209296_1045547


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1045547 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2321
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F032578Metagenome179N
F048305Metagenome148N
F049615Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10455471F032578N/AMIDPIEGRAYDVRSEDILALNYIKTQIQSLDHERRDQYSTLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYTKAGEALGHLNAVQAELFAQICYGITVDQVTIQYIPEQNTFRVQEESK
Ga0209296_10455474F049615AGGAGMTPDTVNLIAELEQRISELSVALELVTEDRDNLRDAGNSLMTELDLCRATLTQAHSDISRLRVWLAQGAEL
Ga0209296_10455475F048305GAGMGMSDYDMHIKGQEFRIAELINETAMEQLQARKLEIQVLELCNEIARLNSHIQTLENTLSAMSGELHALRIETQ
Ga0209296_10455476F031492GAGMSQFNVGDKVILDDESGVIESVFVGAEGTIYDVRYGHTFMIATDVPEEDIQPWMADEQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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