NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1058934

Scaffold Ga0209296_1058934


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1058934 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1971
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F007363Metagenome / Metatranscriptome352Y
F009143Metagenome / Metatranscriptome322Y
F080046Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10589343F009143AGGMMSKWDTIQADVADAYVYLEEEEAYNKALAEGLDLRLSEYEEDEMSKSLTLDWEASE
Ga0209296_10589344F003690GGAGGMIPSGFELVISNEYGLELDSFLGAIYLPWHTIIITALALIAYKIYKRKRAK
Ga0209296_10589347F080046N/AMTITLANEKAKDKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTIGGNANVYKNNNVFTIELPYSEFQYLRGWSK
Ga0209296_10589348F007363GGAGMRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKRKDTYPAEGWQDFAIRYRPTNSLQDNWATVSVRVED
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