Scaffold Ga0209296_1093593

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209296_1093593

Scaffold Ga0209296_1093593

Overview

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1093593 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1451
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017134	Metagenome / Metatranscriptome	242	Y
F045755	Metagenome / Metatranscriptome	152	N
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10935931	F045755	AGGAG	MSEIAGMWICDNCDTLAIVSVETDTILVTQCKCVTNERETNE
Ga0209296_10935933	F076101	GAGG	MYKITLSYDGNAPHWQQDYANEFDAWKDFFAFVDWGFADKFSTVNLYNSEMKCFTRHFYREERKVVTVK
Ga0209296_10935935	F017134	GGA	MELFTVACLNYEICGAQETFDNEAEYEILGDDYICAECYDSEEMEFYELTGWADSDALASAGHGMDEDY

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