NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10000268

Scaffold Ga0209598_10000268


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10000268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42629
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (90.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F002597Metagenome / Metatranscriptome544Y
F029973Metagenome186N
F042141Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000026814F000952AGGAGGMATSDQEQKSINVPQHKRIAAGEKLDGTSMQPKGQSNGSKPQGGLSQAKKK
Ga0209598_1000026830F029973AGGAMSDRFDLEQAILRADMEGDLNLLFDRVCNGPELSQDDLANALLGFITLNALRHEKLWNIFEDMCHQRKFKENV
Ga0209598_1000026835F042141GGAMKLTIEIDNDTIDDIFIDRLRHDLELLETETIPVFSHEPEIEKQHIGALKGAYKQILSYYGEMV
Ga0209598_1000026869F002597AGGAMQIWREMSVDIRGPALVYDPRFHSFDSWASLMCELYAPQQLEIPSAQTDWKVWGNGIKAIDVFTNEAIPSTDNYDDWQVWAEALVNAVNPAT
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