NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10001530

Scaffold Ga0209598_10001530


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10001530 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18890
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015857Metagenome / Metatranscriptome251Y
F093169Metagenome106Y
F098563Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000153015F093169GAGGMSYPITPGFSTLGILMPMDPTQQQHYNSYIGPLVTSDYNAPVLDFGYNYQVSEPVHGAVRHLNGIPEAMWAFDMVNFLFPV
Ga0209598_1000153024F098563GAGGMAEILRKMTLKSLGLTETNLKAIVDASGGHGCAVANIVGKITGSQPGQTALGEYVKLQGQFYGVNLDTGESFEASTCLLPNFISDTLVGALDKSDEVEFGIQVGVKGAKSATGYEYTCRPLVESKPSDAMAKLISIALSTTPKALAA
Ga0209598_100015309F015857GAGGMQSESYGISDIEAFASKFYQGRPLLLTPYSYTLTFSSLAPSTSQTQTLSITANADFIYLQTHHHANVANAAQTVNNKTAPLATILITDSGTNEQFTNAAIDLESYSTNGNIINNLQYPRIISGRSTLTVQLSSYEASNTLNIYVSFDGVLVRAFTS
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