NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10001898

Scaffold Ga0209598_10001898


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10001898 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16747
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (34.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Kolga EXVC016S(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044902Metagenome / Metatranscriptome153Y
F068390Metagenome124N
F088162Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000189826F044902GGAVSAYIYKLIKPSKSIWMKIQVDNDTTIVRNVYHMKFWYKPYAGMEEDKKLQKKLSREEAKTKELFRDVDVEYAITTYEGDISKPFIHGDFFGCWQVVAWKKLKNIEGEITSYPMNTNRILFNDESFSNVWHKAVLADKEDIYDHLTSPGLRVLA
Ga0209598_1000189829F068390N/AMMNETIEQIDWDALYSVGSERKEFTFDLFDPLLLADNSASQNWTATVSFRRGYGDRANAKKNIIFRDGVPSPKELDANHPYYMEEPMPSVKGVNKDNDKLWRQFNKTELKLDEAFLSAFFNAASFEIQSFLIEAGWYGRKFSMYAGCSMCRCSPGYNLKSANGFIRNVAIDVTFKKK
Ga0209598_1000189838F088162N/AMMKKQTIKEYSLLVYMKAQHKYTDTEVQLETLCKEKYNGRGVGGGTNLSNGKRDQQFAFKKLTDAKAFLKHPFTKAVILKDYDLVEVD
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