Scaffold Ga0209598_10003320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209598_10003320

Scaffold Ga0209598_10003320

Overview

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10003320 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12212
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (70.37%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000332017	F007921	AGGA	MIDWLVNRIFRWDSLRHAIFDEVRLYQSVDRSLWEYEKEGPTNLTWSEGDTWYGWTFNPVKKRYYFDDIGNKSLMGLWEDQWLMEADNY
Ga0209598_1000332026	F031497	AGG	MKKTEEIKVAESLVNLMDDHWFSPTIFGHYLAEQPLYTLDRIMEMIVSVISEQAKMYEFYSNRGTSTEGLLLANELNECIKAYQESNELNNLRLPSRSFKVPKRVEPVRSNIFGWKEEEDPFN
Ga0209598_100033206	F001280	GAG	MCMDCGCGINSVGMGLGMTPVTIEDASRDGESGLTLSMVSTPEQTRQFINE

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