NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10018038

Scaffold Ga0209598_10018038


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10018038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4240
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F006218Metagenome / Metatranscriptome378Y
F013409Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1001803813F004111N/AMKEKIKQVNELCAANGAYINQHGKKTVSAWSKVKYFREVFGTEFGINTMIVEHSDRYVIVKCLIMGYDPERIIATGYSKQFRDKPGYLEIAETFATTRALSFFGICLEDLTSKEEYEDLEIPVQPMNGKDTTSAAIRYDDGIILELTKKINYAPHTARLDFLWRANKDLLNQIKIKDLATYNSILNKFNSKRDEITTQNEV
Ga0209598_1001803814F013409N/AMKVILMLIMMNGTVYNLGYKVESYNARTCDKLFDSVTYKGKTSGKNKQGTFYKSKEVFAYSCSIEKTTKGNNERKNKTG
Ga0209598_100180385F006218GAGMGKRKEILKSCGNCHICGKEHLSNEGGWVINAEKLNFCHSLDHSCYDVYFNNVRAAEKQKVVINTENDKRMNMYIEYLKKQKCKHKYATE
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