NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10062927

Scaffold Ga0209598_10062927


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10062927 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1860
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022833Metagenome212Y
F037627Metagenome167N
F061649Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100629272F061649GGAGMRDQTDCHYPHTRLCLRDCEDGCRIRKTTWRKRTIRELQDQELEDEAFRKIPQYDYECKHLGICNDRPTHCLDCPSNNA
Ga0209598_100629274F037627AGGMKPLICADCKWHIPSKQSSSVANYDRCKASESINLVTGEATYKYCESMRMTTSACDLDGKLFELNQAEEETPDGN
Ga0209598_100629275F022833AGGAGMATKLQDSLVRKLQENRELKDTIKDLHTQAEKDKAFLREVQDESNNLELALKKCILSKAELNDKIEQIQDDLNKYAELYHSTKIVAQALGEAV
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