NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10064355

Scaffold Ga0209598_10064355


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10064355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1833
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053807Metagenome / Metatranscriptome140Y
F078631Metagenome / Metatranscriptome116Y
F091365Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100643552F078631N/AMIPITRKSDGVKGYAFLVIDYSQEHYTLFVCGMDDGDIWILDNREISLQNNPSLGRHLKTKQYGKE
Ga0209598_100643554F053807N/AMSYSLVYSARPNSTHTIRVQEQEKDSAYVKSLKACSNLIDAIFAVKAHYRPSKRLHIKGNKYMYIPSDAHQMLLVRFKNFDK
Ga0209598_100643555F091365N/AMKNMKMYSKTELMVMQEMAKKPISTIKLAKRLAKEFNRTFGGVYAKLLVMRKHTKVEPVITNTVSTKTVVEGKKHTISSRPTKIEISENGMTFYF
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