NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10131141

Scaffold Ga0209598_10131141


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10131141 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005387Metagenome / Metatranscriptome402Y
F016369Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_101311412F016369AGGLRLIYKHMKRKAFTLIELVLAITILLGIIGAVVINYDSMVGNSRYFEARENLKTYLINLKHQSAFQQKEFELTFDPDYNMYSSFENFYLLDVVTNDLKILETSATKIVFFLDGTVQESYIVTSNLEGTITNTFIINVIGSVNYEGNTNIVIEKKESDTESN
Ga0209598_101311413F005387N/AMEKLNRKGFFSTLFGGIAGVVAGSTVKASEPIVPLPVVETVVTCDKLVFTHSSGASCVMSFKDSDNFTVRVNNSENISINIHSPLKKPDFVKTETDYGFYGNNGNTQMTITSNGNLGLGTFNPTAKLDIIDMRG
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