Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000011 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	188747
Total Scaffold Genes	273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (40.66%)
Novel Protein Genes	36 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	12 (33.33%)
Associated Families	36

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010817	Metagenome / Metatranscriptome	298	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F014229	Metagenome / Metatranscriptome	264	Y
F016115	Metagenome / Metatranscriptome	249	Y
F016774	Metagenome / Metatranscriptome	244	Y
F017268	Metagenome / Metatranscriptome	241	Y
F020649	Metagenome / Metatranscriptome	222	Y
F022820	Metagenome / Metatranscriptome	212	Y
F024040	Metagenome / Metatranscriptome	207	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F028084	Metagenome / Metatranscriptome	192	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F037078	Metagenome / Metatranscriptome	168	N
F038565	Metagenome / Metatranscriptome	165	Y
F039478	Metagenome / Metatranscriptome	163	Y
F044916	Metagenome / Metatranscriptome	153	Y
F047507	Metagenome / Metatranscriptome	149	N
F048101	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F050171	Metagenome / Metatranscriptome	145	Y
F056412	Metagenome / Metatranscriptome	137	N
F062447	Metagenome / Metatranscriptome	130	N
F071967	Metagenome / Metatranscriptome	121	Y
F091423	Metagenome / Metatranscriptome	107	N
F096610	Metagenome / Metatranscriptome	104	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_10000011108	F017268	N/A	VNLDITIIFNLVLGALSFLGGWLFTRVFSLFDKQETLMKDINDKTFSDFITLRKEMELEGRKHQQEIADLALKISTTYVTKESFETYFDRIEAKLDRNFDIIQNHFNRKN
Ga0209088_10000011113	F047507	N/A	VKKTLSKLWNWKTKTLLVGVGLIVSWVACFKIGFELKKYNNITNLPNSCFVDAMIYASQCNLLLETNNDIWNNVYGFTFYYKDDIDNIIGHAVCVFEYKNNLWIYDPNWGTSPICQIGNKKEYREKIKLYINKTYPIIVVEDFMLNDWTYVQKIKKNKMNKIYKEVSIHLDENKKE
Ga0209088_10000011122	F020649	N/A	MLLKIKNWWANLKSYDKFFFISFVPAMLFTLWGLSDLYINYFDLLSKEDHLQFFLRVFFPVSLATFITVLEHNKRKKLIKDIKTYLNN
Ga0209088_10000011143	F038565	N/A	VTNKKKFNFPESLLKQIDECSYGGYILFNFSAKGEPQVYTKFDNQINAMALLYYLNTWGQSVDQLNFEATTDLISRNNEKEDEQDENDEDS
Ga0209088_1000001116	F011914	N/A	MITDNQIKAMTENELAYLYYALNTEWNSLNMGYDFDWYALRSFKNNVIQNILNKYSANLTDENKGITMEILKKLEGNI
Ga0209088_10000011191	F028084	N/A	MKKLILILPLFLLISCSEQNIDSRELPTKYPETPTMGSADDVSKELYKK
Ga0209088_10000011194	F010817	GGA	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDAGITPYKDNFGNELFLISSEHLVYFGVLNSWLKEKVPADNIIDKTIDKINN
Ga0209088_10000011195	F091423	GAG	MPTGILQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSGIEHAVKDKDLEQARKHISS
Ga0209088_10000011196	F014229	GGAG	MNKLQLAAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLNGNGALAVKVLNAIASGCKDATASYVE
Ga0209088_10000011197	F009669	N/A	MKTMLSKIFGANWRSSTSGVTTVVAITTAIAIHSDPSLVAFLPDIAEVYIIGISKLVAVVSGIVFALTVKDSAVTGGTVAQTIEAEKRTGENI
Ga0209088_100000112	F010897	N/A	MKLINSTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQYKKNKFFHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV
Ga0209088_10000011225	F037078	AGGA	MKNQLNITKQSFGDTTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYANPDAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLSASVSNDTYGFGTITAEKPSDYCGAVSNGRD
Ga0209088_10000011227	F056412	N/A	MNKKLTKYEILIANLEKASADLKKASEESQKRLNESFAKYQEKVSVAHHNSMMVNEKQIEEITCNSAEIC
Ga0209088_10000011228	F024058	N/A	MTHRMINWNFHRKQMRENMRKNTDSSESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK
Ga0209088_10000011230	F024954	N/A	MKDKEMKNIIETLVVGKYYQIQNHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKECEARKNGTMNFIGSFNASSKYKGD
Ga0209088_10000011236	F022820	N/A	MKHQNRLSKILERQILKDEDPKLIAEIEKFLNNLEVVFAKWSKSHPNWKETEE
Ga0209088_10000011244	F010746	AGTAG	MTYKCSVSGEALSPERVEALQVLGIPESKWTNIKHSQVKKLRAVYAGDDGSNDIVICDAVDGGSLFDNSVVMEVENEC
Ga0209088_10000011245	F016115	GAGG	MVGRDGDVAIYKKQLDEVDSEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTNREDADKRFVQLKEKLSAYVATSTLANGEKRGRGRPRKIDLTKTELVVV
Ga0209088_10000011254	F025679	N/A	MTKTFKIGETALGGTIKVVIPKTLTTIKIDVISTNHITRGSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0209088_1000001126	F048101	AGGAG	MTKKMKKFKNIKEFLETCSEDEKEYVYDLYNNASVADLIDLLFEYLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0209088_10000011269	F026210	GGAG	MSPILGANPLDYDATYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEATRFVEDTIPKKNLWQDSQV
Ga0209088_1000001133	F016774	N/A	MPTKNNKIIINQEHLDSLNHWRNQILKMEKSYYSKDLEKERTCRNMINKYLDDVLDYNKNIKEKSKK
Ga0209088_1000001136	F096610	N/A	MANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTR
Ga0209088_1000001139	F049419	AGG	MKLPKIDYLNLATTYILFGLIYGTIVALVWNYLFESISNIHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQEDLDKEADEVERQYEDLDKKD
Ga0209088_1000001145	F044916	N/A	MGKQRTEKSRIEKGLEKEEKTFSLMAKKIVNAIKDEKFLREFTKQCLEELYKDNPKMFADHSKLNLNKK
Ga0209088_1000001148	F032548	N/A	MIYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK
Ga0209088_1000001149	F027756	N/A	MKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCIKINNDWHLVSNIRIIELFSQDERPLLGFN
Ga0209088_1000001154	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDG
Ga0209088_1000001158	F104482	N/A	MKKIKKRKKEVTSEEFEKEMKAQGRFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0209088_1000001160	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYFNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRQNYHSLANRHHLVIDGKIVPYVGEQDNFEFNKKLGCYKDKTTGMEISLDKKEYEYVLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKNNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0209088_1000001161	F062447	AGGAG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTFAETKLIVTFNKDKEGYSFNGGLKSFSLQDLKEVLDSVRQTLNKL
Ga0209088_1000001162	F024040	N/A	MMKMMETIILHTNMNFFVSGHNWLAKVALDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKIVKDYEEKCKEQGL
Ga0209088_1000001176	F050171	GAG	MGMFNYIKVEQDLPLNEELKTLNIDFKKEEYQTKELEDNVMVTYIIRDYRLFELKITGHWEDNPDYVKDNSRFGEFFNKNKWVEDNREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIERHSSKDRIESDENFFKKMDDHKTKMKCPVYSLYFNYYVRTFEKIEWKVYNVINRIISFLNWLQWKGIKTLIKVLTPR
Ga0209088_100000118	F032572	AGG	MTTYKYIADYINKPTIFCYILDRVVNNNPYLFTGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKASLNRWGAKWERV
Ga0209088_1000001183	F039478	N/A	MNWVKILNFIDGIFPEEEIQPMLGTLYKIRGEELPFRYIRFTNSSYSNKTIYHFKHHQLKEYKFNDLSKIERQANKEEVRLYNLIKEHVNEVAENNY
Ga0209088_1000001197	F071967	N/A	VSNQSEALAICSEFSDEYGVDSKDSNTIIVYTKGEYTNELTNLLDRKNYKLKKFQTYGDEVIIYFVPKNKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences