NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000359

Scaffold Ga0209088_10000359


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33355
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (18.48%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F004306Metagenome / Metatranscriptome444Y
F005630Metagenome / Metatranscriptome394N
F010084Metagenome308Y
F011075Metagenome / Metatranscriptome295Y
F011935Metagenome / Metatranscriptome285Y
F024788Metagenome / Metatranscriptome204Y
F025742Metagenome / Metatranscriptome200N
F027416Metagenome194N
F029655Metagenome187Y
F031098Metagenome / Metatranscriptome183N
F048302Metagenome / Metatranscriptome148Y
F063369Metagenome / Metatranscriptome129Y
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000035935F010084N/AMDITEEVIAHFKNNVKTKIGVSSIDGVGVIAIRDIKQYEEVFPIWDYESGIYLIPNNRLADIPNEVVDLLDKYFINDECGYKVIRLFKGFNFLFHGTSYCNSAWPTENNVNITNKGIAMRDIKAGEEILEWYYENINLDKSK
Ga0209088_1000035938F011075GAGMVKQLKIKDMSNFETYLGIIVGSHLNDAMIEVSVNPQLAKKRLKFVKALTFFNEDLTKGVTDEYCNWLWNELFENQRWGAPYVKGTDYENYV
Ga0209088_1000035942F005630N/AMNLYEVDGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEIDEGCDVERLSDFDTMSSRDGIYSVRDLYDFVIN
Ga0209088_1000035943F002303N/AMDIREQCRERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIYLLAMCKANCFVNEF
Ga0209088_1000035951F031098N/AMKTYYDIAIHTASNDVVNIKGVSYSQMMKIANDNPKLIKVEIVKEYSKKISKY
Ga0209088_1000035965F024788N/AMNLEDKTMKLNEQRFATIVILCNVLDTEEGVTDHIKSAICASLINMLERSMNDDDIGLVNLINNSIDNFCAKVEEVRGIQNYRDTLTDTVNLAKRLVDELNTKARRIKEGEDILKGICLN
Ga0209088_1000035971F029655N/AMNKLVFTVNENNCINFLKKYPMVTHLMIQAKGKNVLSAYRNFLKLKDMNESKLGGRGECIGSVSFGTKTFYKYDWDSCTGWAEVFQFVYNKNLNK
Ga0209088_1000035974F011935N/AMVKNIQNFDKVYGEQIYPATGMIYTIEKANVIKTHSEPELLEYFDVRGYDMYNNHKPAEYSVGIFADNKNQHNIACVYKRGEQSAIFTDKGMSSTHYKNKEFFKTYVVTLINRAIK
Ga0209088_1000035977F063369N/AMIITISIVLFLIGIQILIKYTTNEFDRPYRIIKRSYYDVGILKKEWYVVQRRENLLGFRYWTGVECEDSWGDTTVPSFDNFDEAYSLLNKCKQQKPLSGIKDEVELEWNKYPMKIN
Ga0209088_1000035982F004306N/AMSLAQRELGNTFRKDNEKQMSNKHIEIIRFDNAKIHIKEYLNGEQLATTLTYQPAILKMTAARLLVINPDNKEEYYDCRYDDCTIKRLNG
Ga0209088_1000035984F048302N/AMVLITILALAVLGFVGKLIYDVQQKKNKPTKNEDGFDKDTFQKLAGIKPIETTASELPTNVTTKKLNEQIVEALLKAAENSEFPKSDESMNVRTTKITTIDTNFGDNDPLATIPMSRVSVEGKKKMAQIAKEDIKINTEAISKEIIDKGLYTIPTQSKPKRKYKKKTTK
Ga0209088_1000035988F025742N/AMLTIVNGDKLTGTELTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGKQYKLECGTEHMHLYKTSMDKIDVFTNYLEYFI
Ga0209088_1000035990F103248N/AMLTIQNIDKIINITSPLPYKWYISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYFIKQAINDMLNK
Ga0209088_1000035992F027416GGAMLTIENIQKLKGCKVGVNGVVWKILRTKEFDYNSENIYSIVLTTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYTFLRLIKKEIERV
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