NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000417

Scaffold Ga0209088_10000417


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000417 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30957
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (18.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025278Metagenome / Metatranscriptome202N
F034181Metagenome175Y
F043816Metagenome / Metatranscriptome155N
F054853Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000041718F043816N/AMKELLKFREWVEQQCKTGQPFTCAEVLNKIDEILEYDEDIEEIYLTSCYEME
Ga0209088_1000041734F025278N/AMTIFLTIVFLVHLISWVLYQKHQFKERDLYEIKPQEAYEQNKKWHFWKGINHISVYVLVWSLYGLWSMFLFATAFWFGFDILCNVIVLKRPAFYVGVTADTDKFIRKVAEFIKIKPEYTSALIKILILIILLILK
Ga0209088_1000041742F054853N/AMEEEVKPDAEPIEELEWEEAETTTRSDLISCAYYAINAVDEIDLTLISKIEANKIKKIRRQSLDIIAEVINELHEEIFPEIEE
Ga0209088_100004175F034181GGAMNAIIYLNYQNLNVETLANNIKRAGENTNYIKFLMNEEGIANAINKCLRLLNFDIIDYVTIMGNDIIEPDNWLQIRNDFMQDKTIGICSIPLDGCELDSLDLIGNFTISKEVILKVGAFNEELDPYGAIDLDYCTRVRAAGFKNKYLPYCKAIHIEQNGLDAYGYNKAESVKKTWELHQNNVANYSNGSKSYYLAL
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