NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10001187

Scaffold Ga0209088_10001187


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10001187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16990
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F030060Metagenome186N
F086811Metagenome110N
F088509Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000118717F003049AGGMKSAKQIIGCRKAKKGENTNGLGMITFGKSYPCKTKFVNVDINYDDKAKKALYEAGMFALKQDPEAVIEYVIKKALEEMAKCKK
Ga0209088_1000118719F030060N/AMTRGVITSEAPQIHWEHINVKGGRVLDLGCGFWTEAERQEGNGTAKYFLLQKPEFYMGIDTNQGDIESLAKQYPEGKFLCQRIESSEQIQGLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFMAWFESIGFECYRHDPVSFCPEISVIYGRLKC
Ga0209088_1000118723F088509N/AMTSIERQLENGMATALSSTGLNIFKRDTEGLRLLPSLVVESSIGSEEIIPNSGVFKCPISVTYSTRADTTTRAAFDSKFQEILQIMYQSPNLASVLTTATLKVFIANVISESPAVLSANRTWSKTISLETTCTSL
Ga0209088_1000118724F086811N/AMTSPQFKVEDALASLLTPVSGLNVYTTNRTGLRLFPYASINASIGSQQIVPYSGVFEISVELNYSDSTARTTQSIFDDTYYSIFSTLYSNNDTLLAKVQDKVTDLKIFMGRITSQSPSIRASKRAWQRSLTLSFIVTPDPTADGTRNYDFSDFLNSFYLASI
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