NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10002514

Scaffold Ga0209088_10002514


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10002514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11217
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (67.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F016143Metagenome249Y
F017287Metagenome241Y
F027399Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000251411F007848GGAGMKDFLGACLLGAILGAMFAYGVPAKAQTIPMTNAQGYNVGTVQINGNTAQFVNPMGVTTQIATLYPGQVIIQTPSGVTTAVVGNTGYTVPPSPTTPMTPKVMQ
Ga0209088_1000251415F006255GGAMGELNQLMLEHEEFLEEALDCMEYGGELLTQAQVDCIRQACGKPNRHKKNSVLTEVFNDFGTIFGGNHA
Ga0209088_1000251421F017287N/AMKQVMNLITWFIWSPKMDEYVRRVFEGEAPCDKCSKAEDCREYEWACRAFSYYVLNGTFKEYTARLPTKHMFNKIFKEDDKALKNYMKSIRAKEQMGIVDLFEKEEEDGH
Ga0209088_1000251424F016143GGAGMNNEYIYTPTGTDITVRWKLAGWIPPSELPEYLTKWKHYQELPLRKLDDNARKEYELVMKKAKVMRVR
Ga0209088_1000251429F027399AGGAGMNFTFTWILDKFGFQPKIETFDLPVKKSAVKKPVAKKPAAKKTVLKKA
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