NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10005202

Scaffold Ga0209088_10005202


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10005202 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7452
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F008303Metagenome / Metatranscriptome335Y
F028085Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100052023F028085GAGGMLEMLVNVFVMAAMLALGSILFVFVCAMVGWMIYTTQNGGDDD
Ga0209088_100052026F008303GGAGGMIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAQERSISAMCNKKSKSKTTKSLCKRWKEQQNA
Ga0209088_100052027F002420AGGAMTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYAHSAMHYNEDRIKRLESRLLKHTEDGGYK

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