Scaffold Ga0209088_10005202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209088_10005202

Scaffold Ga0209088_10005202

Overview

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10005202 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7452
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F028085	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100052023	F028085	GAGG	MLEMLVNVFVMAAMLALGSILFVFVCAMVGWMIYTTQNGGDDD
Ga0209088_100052026	F008303	GGAGG	MIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAQERSISAMCNKKSKSKTTKSLCKRWKEQQNA
Ga0209088_100052027	F002420	AGGA	MTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYAHSAMHYNEDRIKRLESRLLKHTEDGGYK

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