NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10015587

Scaffold Ga0209088_10015587


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10015587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4015
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100155873F020860AGTAGMEITKAKKLKEGGYALYAVDPKTKTETQVGYIGEELPLEGYLPKGLKIENS
Ga0209088_100155874F016115GAGGMVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCCNREDADKRFIQLKEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS
Ga0209088_100155875F010746N/AMIYKCAVSGEAIPPERVEALQVLGVPETLWTKKEFSQTRKLRAVYAGDDGSNDIVICDAVDGGSMFDNAVIAEVENE
Ga0209088_100155876F035200GGAGGMNSKFIVLRDGIRVSEDMHSSEASAEIEANHWREIIKRWPDGTKVVVKKIGG
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