NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10070736

Scaffold Ga0209088_10070736


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10070736 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1651
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016143Metagenome249Y
F017287Metagenome241Y
F027764Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100707362F017287N/AMDIRRVFEGEAPCDNCDQAQDCKENEWACRAFSYYVLMGRFEEYTVRQPTRGMFNKIFKEDDNALKNYLKSVRAKEEMGIHDLFEE
Ga0209088_100707364F027764AGGMQIQIEIVKENKDGSADALVYFDAEGLGILVETGILSILRQYIEQEKKTKKGKK
Ga0209088_100707366F016143GGAMDNDYIYTPTGTDITVRWRLTGWIPPSELPEYLAKWKHFQELPLRKLDDQAKKEYELVMKKAKVMRIR
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