NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209796_10299006

Scaffold Ga0209796_10299006


Overview

Basic Information
Taxon OID3300027766 Open in IMG/M
Scaffold IDGa0209796_10299006 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100263Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209796_102990061F100263N/ARSNSQETILLQIEDDKPTVFTPKALKWDEITIPDEIELQEPQITAQIERKDIEQIIEEPDGKVVLKFRSLSVREDSSLPSSSNYRRSFSDISSQTGNLDHTQRYRFRSPIPEPIVDPPSPTSSGIGNTINMLTKLDFSIDWPTLKEDYYSQQNANLRNWFEVIDFECREQI
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