NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000377

Scaffold Ga0209770_10000377


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000377 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24811
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (46.15%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F009147Metagenome / Metatranscriptome322N
F010835Metagenome / Metatranscriptome298N
F013412Metagenome / Metatranscriptome271N
F013879Metagenome / Metatranscriptome267N
F031459Metagenome / Metatranscriptome182N
F038227Metagenome / Metatranscriptome166N
F061802Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000037710F038227N/AMIANGIALNRLFAGQAGGTDAPVLRRDVLREDEGFLWQEDGTSKLVITYGTFEFLLREDAGFLQQEDLFKIAIQAN
Ga0209770_1000037714F031459N/AMQTDTNSNSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFVAAAIGLWKALKK
Ga0209770_1000037719F013879GGAGMTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAREIEMHIAAKLAEAFDGSESKGIVVQ
Ga0209770_1000037720F010835AGGAMNGVALRTERALVDWLSAQDWSASPLGTPTCLTSYGHGAFTDPDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNVGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANS
Ga0209770_100003773F061802GAGMGARCMLEDVTPDGPMEILNCQKPRGLEALRQNKIALRAIERDTVLRFLPIADDKPSRIDGFIWNQNSGVITGSYEVKSRNYGLAKLESTFGNQWMISWSKLQAALEITKHTKLPFWGVLHLEPDGLVLMVEIFNENATWGCNVQLRDKLMDGVNERMAFLNMSEARKHRIKESNTELF
Ga0209770_1000037732F013412GGAGGMRHLWSRGFGRLHSDAEVITTDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDPEDMDCVRMLTEGTHIMFDGDCDALAEKSSSGWWYANPRITGRIHEIIPPHDAS
Ga0209770_100003778F005633N/AMRLATTIAVDKNGKSKLVSGPDIDASLQRDNFNTVSVPEGGKLILWIQGALAPKVRKG
Ga0209770_100003779F009147GAGMGRQGFQLVTSTAAQTGNWSGLIPTEPTVFTSITGFQISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARSE
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