Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10000449 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10000449 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22825
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (70.13%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

22825

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (70.13%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F017818	Metagenome / Metatranscriptome	238	Y
F032252	Metagenome / Metatranscriptome	180	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048267	Metagenome / Metatranscriptome	148	Y
F074802	Metagenome / Metatranscriptome	119	N
F083877	Metagenome / Metatranscriptome	112	Y
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000044918	F036765	N/A	MTILATELLKLFTKAQKLGLSVNVREDKDGDYVIRIFEMLRPENFDDYLIINQKGESTCDKGAYSFDAMMDVLDEELETKRRDELKAQKRQELIDRLTDEEKELLNLK
Ga0209770_1000044921	F013514	GGA	MIMNLEEIQKYLDDNNITLEEYLRQNMITDEEKKYVDKIWVDAIYKNLGEDT
Ga0209770_1000044936	F074802	GAGG	MTKCTCSYIQIGYKTSNTKNLNPDCPLHGTDSVWYNSPEQVKKRDERSQRLRELYDAARKARENVNEKL
Ga0209770_1000044943	F048267	GGTGG	MTDKEWETALKSMNEGVKKWVNEEIDKIKYNIIKDIINGELK
Ga0209770_1000044947	F032252	GGAGG	MKLYRYKKDGHLYTLYEQLRPFYDLVAVPYFPNQGILAKSKRSISMNDFIVVSER
Ga0209770_1000044953	F101046	N/A	MDFTDYGISLEPEELREIITGKMGFRKCPDCQGDGESWTLHYVLADDLDQSNEQFRDVSAQFAADFDEDNLPPQYSFGECYLYKCDTCKGVGYVPIEGY
Ga0209770_1000044962	F083877	GGTGG	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDK
Ga0209770_1000044975	F017818	AGTAG	MSGGHFKDAYHDWIDENDTYPSHSHKWIVGLYNKYEGVEALHRYFGPFDTREDAKVFAADYREKYTKSDFITRSKIFPLCEVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10000449

Overview

Ecosystem & Geography

Associated Families

Sequences