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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10001133 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13924 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.16%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002303 | Metagenome / Metatranscriptome | 573 | Y |
| F003542 | Metagenome / Metatranscriptome | 480 | Y |
| F005630 | Metagenome / Metatranscriptome | 394 | N |
| F010836 | Metagenome / Metatranscriptome | 298 | Y |
| F027843 | Metagenome | 193 | Y |
| F028510 | Metagenome | 191 | Y |
| F029655 | Metagenome | 187 | Y |
| F039625 | Metagenome | 163 | Y |
| F056617 | Metagenome / Metatranscriptome | 137 | N |
| F070108 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_100011331 | F056617 | N/A | MIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVNYNTLHKATESGAR |
| Ga0209770_1000113311 | F028510 | N/A | MKNTLKQRTYECKCGVQTKEYVWDNDLDKTKVECSECSKQLTNKNLVSTNTNWAASIRTPTKNR |
| Ga0209770_1000113315 | F010836 | N/A | MATSNFHNVNASHIFACSLENEWDYEDLVDNLKSELSNDSDYVDYGKTDNNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGCNLDWNVDYLLNGDVSYDSPDFYIDDIAYCGNLTKSAATKYAKLAEKKAEKLKNEIVEKLEAIYNDYSMKLGVTAQFSNGETIYHKVA |
| Ga0209770_1000113318 | F027843 | GGA | MQIEMMNANGSVWVVKRKFKADSWFVQGLFSNKFTAQEACEWYCVEKLLRDANNTHYLVNEVSEAQIIEDEVQS |
| Ga0209770_1000113321 | F070108 | N/A | MVFSLEEQMDIELILAEASAYGLSAEVEEYAQRYLSEGCTPVEAYQHAYYEWIK |
| Ga0209770_1000113324 | F002303 | N/A | MDIREQNRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCKANCYV |
| Ga0209770_1000113326 | F039625 | N/A | MNINHIEITQIKSIIAKASIEELRMLNETIINTIKFKRTTEASLKKMELSIGMKVRVNHPKLYGRELVVNKINRTKATLGVIGGFGSYNVPISLIEY |
| Ga0209770_1000113329 | F029655 | GAG | MNKLVFKINEKACVAFLKKYPLVCNLMENSNGKDLLSAYKKFLKLKDINEPKLGGRGESIGSVSFGTKTFYKYDWDTCSGWAEVFEYYKSKK |
| Ga0209770_100011333 | F005630 | N/A | MANLYEVEGFYGSRNRGTILVYETYSGKRWYCVEGSCNINCTYDEINEGCDVETISDIDTMSSRDGIYSARELCDFVIN |
| Ga0209770_100011335 | F003542 | N/A | MSKVNFDYDLFSEKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMKKMLGDNPNRCNTSSYYSSVRRCLKEIDVCKFDSVKRCMVKGSNWNRFVSAEDWSWFIMRTGSCEYSTIIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |