Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10001767 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10001767 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11040
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (32.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11040

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (32.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F031030	Metagenome / Metatranscriptome	183	N
F072270	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100017672	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYKEHIEFARKYYPPEATTMVMSIHSEYNDCTYDNSFQYIIVYDMDGNELPPLKKTAKECREHWTTEYLPIPNTNSGHYGASESDEPLEDVVIPLTSEVPELYIKES
Ga0209770_1000176723	F031030	AGGA	MFDDIVCKYPLPLPEDPKGYINDRYQTKDFDNAMDLYEIREDGKLWLRCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQIFPITDTVRLYAYDSDTNDKYDYWIEYDVTFVDGKVTAAKLLEFTATDNSERKERHRKDVEYWTNRQKFEYTLFYRLIGKPYNKTITFICRSIHKSATWITYKIWHVERFLKI
Ga0209770_100017673	F020529	AGGA	MFSNYNIWKYCAKYFVLTTLGAYIFNLSASMINQKSDVANLIGSALFAGLFVGTLVILKSDVTKLVKKLEENKNKENE
Ga0209770_100017676	F006018	N/A	MSVGCDFYQTCTNNSVNMFYKTKRKFEPVLDGSVCLSYSSGKNTKDYADNCYPNVLKKIYIYE
Ga0209770_100017678	F072270	N/A	MKLEKIPLTKFLSHLTNISPLEYLIELLPKCTENGPWIAGGCLHRTYRKLPLTNADIDVFFKNKEQFEQFVSAISLTSLFSGYTIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDSIEELFKSFDINVCRIAYDGTNVVYEDGILNQINNNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKLLTHAFYKSKKKAIDILDQDLLTKKPIQTYEGLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10001767

Overview

Ecosystem & Geography

Associated Families

Sequences