NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10002136

Scaffold Ga0209770_10002136


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10002136 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9923
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F023344Metagenome / Metatranscriptome210Y
F038246Metagenome166Y
F047059Metagenome / Metatranscriptome150Y
F060917Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100021361F023344AGGCGGMEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEFCL
Ga0209770_1000213617F038246AGGAMGILDNLEAALEAEEAEKCHYCQAIAVYNDLAEVDKNYQVVGVCACHSFKGLSS
Ga0209770_1000213623F060917AGGAMIDWLVNRIFRFTSLRQAIFEEVHMYDHISDIFTNSDLTDIASCSWMEGDTWYGWEYDKKKNRYYFNDIGNKSLVGLWEDQWLDKADTN
Ga0209770_100021363F001460GGAMLGYTKTDIDNMINSVHDIKLFYIRTPSDLIDKEPLIKNLEMTISFLQGLWAEGYFDGYE
Ga0209770_100021364F047059AGAAGGMATKTSTFLEYMKIHLISLEQDLEDARNNIPLNEDEYFESDAYYMGAIDTMRHILSVASDIMINNERNINESGRHWTPATFTTFG
Ga0209770_100021365F000263AGGAMNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
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