NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209086_10000407

Scaffold Ga0209086_10000407


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10000407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37313
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (49.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013404Metagenome271Y
F034568Metagenome174Y
F083631Metagenome112N
F102843Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1000040746F102843N/AMCTIIKRWTSNFFWYMNKNRYEHRITLSERFRVFWKLRNEKTWDEKFQEWRSMKP
Ga0209086_1000040751F034568GAGMEVEEYGVKKSWDGWRTFAYVRDGTPMGLMPITWANELFKNKQQAKTFIDDLATKNGWKK
Ga0209086_1000040760F013404AGGAGGMLDTKLESAIQKLDDTFTKQKSIANQLVTEHGKLQQALANMLVNADEDCPKQYRTEHFCRAINDGYSLLKTIGYFRKRVK
Ga0209086_1000040763F083631GGAGGMKKPRLNLVPATEDENVYQHHFLPEGIFTTSWEDVKNIKDYIKTFNDRKLREEHRLYTSIERPTILENYFKDFIKQEINTRGIGV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.