NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10000787

Scaffold Ga0209086_10000787


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10000787 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26327
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093278Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1000078722F093278N/AMTKILFIMFQGSGTNLKTWNEYTKSKFLDRLKDLGTVYTYQDKIHNIWHYDKSNPEYFDYNSDIDIDLNYVNPDTHITTIFRDIKGKYNIEEYKFIPIGWSAGCYLALYFAQIYSTQCIHVILLNSALWTPNNMKIRLKVVDDGIYPITNAKYKKMLHNWKTNQTDVEDAYKINNLNNYIRSLFISQYLNLKLHVPTLAFVNIQELEKDEWSKDFNNKLRLSEVKILEKYNPKNFKAIILCNKSHYIFNMIQPAKYIIKQIKNIIT
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