NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10031970

Scaffold Ga0209086_10031970


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10031970 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3131
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F005504Metagenome / Metatranscriptome398Y
F007644Metagenome / Metatranscriptome347Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100319701F013414AGGCGGMKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTDTGIYNSGLTSEGLFLANELNETLNRLIKTYKWENIKLPVDPDKVIAKLPKVAEQSYRHSWLHDETKDPVLVSHPFI
Ga0209086_1003197010F005504N/ACLLTLEFEEETGWGGEYEIVRGEVKELAEWENRCYACQSFDTLSYCEDDCGEFCSECNQGSWQDEEAMKECQTHSVLLPLKTYTQEEALNG
Ga0209086_100319703F009685GAGGMKMSDQHIDAVLAEAQGLLWGGSETENIAAHNLISNLIKDRMTFKNLE
Ga0209086_100319706F000263AGGAMNSEDIGLPPHLQRLVNAGVTGLDIMHGELKNLMLIAEQELADAIEVEEESGEAMDSMQRTEATGRLDTLVELYQLTYQLSFAIGARNV
Ga0209086_100319707F007644GGAGGLTTPTKSSKFLEYMKIHLISLEQDLESNPESINVIDIPGQIEATRHLLSVATDIMNNSNERIYE
Ga0209086_100319708F001460GAGGMLGYTENDLNRMINAVHDAKLFYLRYPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTD
Ga0209086_100319709F002387AGGAGGMASFLEDVNQMVIDAVYQEIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIYGEFNKFYNLKEGDEDYLC
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