NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10037977

Scaffold Ga0209086_10037977


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10037977 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2802
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031764Metagenome / Metatranscriptome181Y
F034567Metagenome / Metatranscriptome174Y
F058818Metagenome / Metatranscriptome134N
F066775Metagenome / Metatranscriptome126N
F082590Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100379771F031764N/AEKKVMTNTNIQNTISKVHANISSLFSKEDVIKLLTDLDTEIRNENPKGQIDKDDLLTTFRQMLSEKEWDGVVDKDDVDFSIGYDNKIEVDRIAIDEDFLISEVVDALESLWDALEEQED
Ga0209086_100379772F082590AGGMIEKKLFSDTITEEQYNKLTRFDINYERKPAHPDEVHSSINFNELHESVREIVSNLPIVEFPGSFLDYFLDGNQQFYLVTYKEKVFLVDTQGYDYARYVIQLKDLVILEKGDTMQMKSHPGMVEEIISMLKHMDVDGETMEYILDNVGMKGQMLRQLFLKAHKDVLWDLTLEKKQLDKSI
Ga0209086_100379773F034567GGAGLINLFNYYDYINHYGNRMFAIAGVKAMPARYCSILFTGSYDECMERLDPKGLEGSVEDIQKRVAFRR
Ga0209086_100379774F058818N/AMIKELKKLQNILHDMAAELYGDLWIMNDKFWNSPTERQLREVTMQLIDLGVTIDPSDEQIEAAKIIAKKFGIQLPLED
Ga0209086_100379775F066775N/AMTKNESLEIIKAALIEKRDAVELACEALGKEAKEEKKAIFEELFAEELLSYADVAVEVGYSGIVFKVGYKEIGSINERSYWRDEDKDKKYYFNTYSTMCEDEFEFKRLIFNGKIALRMWFDMDSIREAFMIPFSKKELYDALSQDLNILSGEIKQKEYQMHEVRRQDIIDKLNGEGIEWTTNKCFEFNRQWTSYLVKKVRIVKATKSGKTVDLEVTYALYDWSYDDEGNSMRVEKEDRIATHEGIKMEYVMGNFRDLIYIY
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