Scaffold Ga0209768_10003255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209768_10003255

Scaffold Ga0209768_10003255

Overview

Basic Information
Taxon OID	3300027772 Open in IMG/M
Scaffold ID	Ga0209768_10003255 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9890
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008614	Metagenome / Metatranscriptome	330	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209768_100032554	F008614	AGGAG	MQTDVKAVHLEATGTAVPYRTRVRGYQFLTGGTAGDIIFRDGGSGGPITLQFNIAVSPTNPLSFTIPGEGVLFSTDVHITLPASAKITVFYG

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