Scaffold Ga0209810

Basic Information
Taxon OID	3300027773 Open in IMG/M
Scaffold ID	Ga0209810_1000007 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209810_1000007 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	894281
Total Scaffold Genes	923 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	600 (65.01%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

894281

Total Scaffold Genes

923 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

600 (65.01%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002754	Metagenome / Metatranscriptome	532	Y
F003716	Metagenome / Metatranscriptome	472	Y
F013332	Metagenome / Metatranscriptome	272	Y
F015236	Metagenome / Metatranscriptome	256	Y
F015635	Metagenome / Metatranscriptome	253	Y
F021751	Metagenome / Metatranscriptome	217	Y
F025570	Metagenome / Metatranscriptome	201	Y
F029183	Metagenome / Metatranscriptome	189	Y
F030936	Metagenome / Metatranscriptome	184	Y
F046969	Metagenome / Metatranscriptome	150	Y
F102797	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_1000007115	F029183	AGG	MLQQIEELLRAEEPTLARMEDTLTEGYAQALALEAERWRLERRIGEFARNGRTDLDELRRLGSRLTRADGELERLRTLLGSLHERTRTVRRAS
Ga0209810_1000007207	F002754	GGAGG	MADDGAPVAARNERAAISSDANLHVQVTGATKKFHLWQQGPAWLLGFAAIGLGFLMVLRNYDSAAGWFAVSTGIILAVIASFRAPFSIGESSVSTTPGRHPKKKPATPANPPSE
Ga0209810_1000007418	F025570	GAG	MSTALLLLPALAAVVFVCLGWRRQKPGVLAETAPPPASISGEVDPLTALDTLLADVEGATVRIEGADELDERAATELEQLADKLEAAAASLERVR
Ga0209810_1000007484	F015236	AGG	VPYPPDPALVQRLRDVLADDPVTETELRELIEQADGLVRALDAHVAGSERRVAELAHDPDASLVEIAAELHRAAALRPRLHEARRLLAELETRAREWRTSWLLGQTGVGLLR
Ga0209810_1000007487	F013332	GGAGG	MSKRFALAGAVAVALAIPLLFGAARPAAAGSGTSQSLCIGHHPQEYVWYTSSCTGHDEPELDPLSNKPGSAQNLTWTVVLPKDGTTSVDSVTPTFWIGGTVTDPNSLFGQAFLELQFYPNSLLKGCSSGGGFNVVYAPGDYVVCSPVWEVSKHGNSESAAFNAPLLDSQTGQPLVMHAGDTITDHQYVTAAADGMHITVTDLTTGHAGTIVLNSKADGPLMPAFSTQQLGNALGWGLVDDAPNSLVWEIGHTSDFTTPGGQFCLPGSATKPPCYSYNVPTWLGFQPAVVKGVTFGDGSSAKGWAVVSDFGGRAEVDQYCGAANYGTPFCWYPWYAFNGALGGFTYGGDYPGTTSDFGQAAQFQETTNCPSPTGPDTTYCATVIK
Ga0209810_1000007557	F003716	GGAGG	MRTKILLATAVTALACTGAALAGNGNGHGKFLYAFTGRLTATPSNGGVSLTVAGGNRAALRAMLGQPVTQTFAYDSTTEFLKWSGGKPTVVQTGDLAAGDYVRVNVRTERGADLATIEHQAAGIVGDHGTSLYKPSMPLYLVRGRLTSVQSGSVAVHVTGGNRLALRLLLGGSADQTFAYGDNTIFLLWQGKVPTVIDAAHLVVGDRIVVRIRAPKGSTLAQVESTPANHIGDREPATAE
Ga0209810_1000007575	F015635	N/A	MQAPERPPFQPVEAGAILSSTVGLCAGGGALVGWGAGNVGYGVLGGVVVGIPAGVFAVYRRFRGYFS
Ga0209810_1000007707	F102797	N/A	MTLDMELARANAEALERALAARRRALATIDGDAERERRAAALSAFEGYTALLREPVPPAPTRNPIRYCFKLVFPDGRWSIDEKQLRVVPRAGDVVGFDGCGRWRIEGAQRVGVKPAGKPPRTFFVCAPVV
Ga0209810_1000007709	F046969	N/A	MAVKTEERARSAIARFGEEVAEKAWTVGRDPKAERRKRLVWGLLQGALGAVATIGARRLGARLWGVLTGEQPPARQ
Ga0209810_1000007776	F021751	AGG	MIGVGFALIVVGVIFLFIIPWVGIPVGIVGLVLAIAYFAGFGRRAARGDQPQA
Ga0209810_1000007800	F030936	N/A	VHLVALSFSHHRTLRVEEIAGALAAIAGGLLVIGGVAPFGRRFGMIAGGIALAAAGVLSVLAVRYGVRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209810_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences