NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000031

Scaffold Ga0209810_1000031


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000031 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)468321
Total Scaffold Genes508 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)312 (61.42%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003958Metagenome / Metatranscriptome460Y
F004571Metagenome / Metatranscriptome433Y
F005370Metagenome / Metatranscriptome403Y
F005423Metagenome / Metatranscriptome401Y
F008455Metagenome / Metatranscriptome333Y
F026262Metagenome / Metatranscriptome198Y
F030611Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000031151F005370GGAGMINRLSWDTTAPRKPTKRRPREEPVDMGLLEAEAELIRVAWDKRRRLMSY
Ga0209810_1000031191F004571AGGAGGMDTMRLPRPRHGDPVDTTAELRQLAAAVLEDDVQTLARTTAYLRRSYRAVFLGYVAMLVFGLAAVVTAFVKGLTATTVGEAVAAIGLAGLTVGIFAAFFVQRPSAALERNAIFMPWVSIVLTTFWTRMLYLDDPATLDEKLGRAAKDASEELAAIAQRYASIDRSELAVAKEAARTRPAKPT
Ga0209810_1000031304F026262N/AMVECLNCGKRRETPEHECPRCAYLGWAYVEELNDALRRRLRERTLVDRRLRLAG
Ga0209810_1000031430F008455N/AMTIGQRLIAEEHHLQEIASEGYQPAALVIVLAAILLGLGVIVGLALGVTLAVYYWV
Ga0209810_10000316F003958N/AVSNRIGAGFVVLQMDYEPTMAFVVERQEPPGIEVRVNFGVFAGRAATPAEIDRLAEWLLDEVGEVSIIAEERHEIDAHVEAAVHLVRIEVAPDRVPAEPEQRRELEQRIRDRAEHWARLCVAERHADVADAF
Ga0209810_100003178F005423GGAVTAAEKVRDFFRLVAPGFVIDGELPSVQLEGVEVRQDGHAIAMVQADGRTLPIRFTFDEGKIARVEVL
Ga0209810_100003199F030611AGAAGGMDHALKTPDPHEPTPLWCACEKPLPVHIAERKGAARSVCARCERPLRLTLRLA
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