NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000275

Scaffold Ga0209810_1000275


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000275 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)134785
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (69.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057263Metagenome / Metatranscriptome136Y
F099748Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000275131F099748AGGCGGVRIRLPRSRGRGPWAIASFIAIPLFFSSLMASTLALEKPHVIQWKGCKAICTTWHQPTSGTEARIWLWALLPPLLLSLVGWICSRLPLGWYVACAAAVVEAVAVVHRLDTWTRHHTARFPVGVDLIPKSNATSNQYDPGEWETLARQTALSLEHWTIGLAAASAFVMTALYVRRRFFARRSSFAATPLEGVHAPDATTPGLDPGS
Ga0209810_100027521F057263GAGMEDALAFCVRDPAAPAVEVRINFGVFTGRNATQAEIDELARELNGEVESFAIVAEERHEFGGSREAALRQVVIAVPPAYAGPVPSELCGRILELAERWAERCIRDRTDLGELGSAF
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