NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209433_10000841

Scaffold Ga0209433_10000841


Overview

Basic Information
Taxon OID3300027774 Open in IMG/M
Scaffold IDGa0209433_10000841 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9527
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)0.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020879Metagenome / Metatranscriptome221Y
F089156Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209433_100008413F089156N/AMLIIQFDDYIDPIDFPVEIIQSFKHNTYLVDCELSEYNIIYNITSNYPVLSMQSNEDCAYIDVYERHTTSYTTVYAEDTLAPLIEKLDLLEAQKPQILCFSWQMDRNYIVDYRIKKLIEAGNMVVCAGGNQDLPVHDISPIAVDGTIKVGGNKHNGHYQNWVDIYDVTVPNEPNSNKAVHTVCELMANKELEIDYELGYYSDSSIRSAPWPLRLAQTPSKQTKYYEFNPISNLRYCAGEHLIPVRPGDRVSMLYGGCALEDFVEARYVDMGIELPRGITFDLQSGWLYGTFKFKQDTFHRFQVDINGQLFEYHMISCDADNKPTYEDVKHKYFNRPYDAPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDYHLYREAE
Ga0209433_100008415F020879AGAAGMTNKQKKQMHNFVQTTLKVVGCSLLFLGLTMSLGISYNPHMELYAYLMLFAGTVIIMVHSLRGTDHLYLLVSSAGFLLVSNAFLGTETAIMLADSYGIALTEEQTWFAKYGKLFVEILKAVT
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