Scaffold Ga0209433_10017198

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209433_10017198

Scaffold Ga0209433_10017198

Overview

Basic Information
Taxon OID	3300027774 Open in IMG/M
Scaffold ID	Ga0209433_10017198 Open in IMG/M
Source Dataset Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2390
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	0.0	Long. (^o)	-158.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066701	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209433_100171983	F066701	GAGG	MIVTLNSTNAGYYTYDPELSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNFTKADDLEILYNLLVNGQYHPDEIVIGPTDIFDAQNFDEIMNHEYMFKLYEISAIGYTSTLLQPYWIIKEKLDKIWSLYRHIKRIPDIDFKIVLDVEKYLNGELDDWYTKLKLFEHGSVQFRVNYYKGVFDRISYNELCEKTFEDFNAPVVITPSFLTDRNARGKVKQHLANFRKDLLDQKIDLKWRDYYTFFDAKFNGLGCQNYSFYGGKLY

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