NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209433_10017438

Scaffold Ga0209433_10017438


Overview

Basic Information
Taxon OID3300027774 Open in IMG/M
Scaffold IDGa0209433_10017438 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2376
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)0.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012583Metagenome / Metatranscriptome279Y
F025518Metagenome / Metatranscriptome201Y
F034959Metagenome / Metatranscriptome173Y
F084358Metagenome112N
F096162Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209433_1001743811F096162N/ALMIKELTEDQLIELKSEFVDFKLNEMTNKELRDYVRSIMLLEIDPDPEILKDEIDSYDDNLYEVLVPYVLDEEGSWEIMEEFKHDRREQW
Ga0209433_100174382F034959GAGGMKIEVNKEQLEILKYAVLWYECNDMKEEKLIDELEVILYNAQEQDLLRSVTTLGDLN
Ga0209433_100174383F025518GGAGGMTKKKLVHNTKTSLREEAKEYLPTVKEFYPHLDDLLLDRISKYCVVYSKGKDKASIRQAINDFEQTFDEELTQ
Ga0209433_100174385F012583GGAGGMSLSEQVKIQAFDKYIMRGGDQSLRNIEDMCDFGFNMCQLGYDTETFNDVVIDVIRKLTERLS
Ga0209433_100174389F084358AGGAGMTLIDFDKKELLDIYQALLCYRTDMTIIDPKGNGLTDEQKAFYHRLSDLMEKVGNVRKMCTCKENVSNDT
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