NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209433_10135672

Scaffold Ga0209433_10135672


Overview

Basic Information
Taxon OID3300027774 Open in IMG/M
Scaffold IDGa0209433_10135672 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)0.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209433_101356721F006217N/ASVIEEPNQIHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKKGKC
Ga0209433_101356723F029123AGGAGMLYEVWFGQNGKWFGYHSFKHKMDAQRYEERYKKVFPNLTVELRRREHAS
Ga0209433_101356724F027536GGAGGMRVSPDGWRYKVTPIDRVINDCKRKADDAWWDGNDEEARLHEQEQKLHEKDKEEGVLWVPNF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.