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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027775 Open in IMG/M |
| Scaffold ID | Ga0209177_10007417 Open in IMG/M |
| Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2331 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025253 | Metagenome | 202 | Y |
| F031042 | Metagenome / Metatranscriptome | 183 | Y |
| F040564 | Metagenome | 161 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209177_100074172 | F025253 | N/A | MDRLTGAVLVLLLTVASSAAAAGPTDIARVDEYIDAPRALFGRTRAELEARLGTPASERARTDGVVLSWPGVDVVLSRSARVAGVVVRAAGHTLPHGLDIGATRTRVDALLGEALDTADEHAVYRDADGFPNSVEFFFRGGRVTRIEWRFWAE |
| Ga0209177_100074173 | F040564 | N/A | MATLTALCSDEATIVLCSRLRRLGFDVAWRYVEDLREGRIEAEAFADAEPPDLLLYDLDEPVDESLMLLTLFRSLPAMADVPVVLLRMDRARLPPLDAPGIAAVLTRPCEARLARRVIEAALRDGRGLDEAA |
| Ga0209177_100074174 | F031042 | N/A | MATCTPHARGGSATLVRMRLQSRMRLAVIVLAAALLASACTTPLPQPPPAGAGAVIDDIRGSWRGTWGGAPVSLLIANQLVSAGYSGLYVGTYQILGHERPGDDGILTSQIDGAQTSVRAYGWFGGLEGQLVLRLFADSPSGQQRLTLRPDGPDRFVGMGESSFRRGPSGPIELVRAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |