NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10003305

Scaffold Ga0209709_10003305


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10003305 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13472
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F004439Metagenome438Y
F006919Metagenome362Y
F012510Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000330518F012510AGGAGMKTFKTHINELYKDYPGKGWVLGTKDEPKKLKDKDIIWRSKVHHYDNTVRSDNTRFIIVKNKGKFSMYAKSDKSGKIVFHFGDKPTLDDAKEFASIRKWQEKK
Ga0209709_1000330520F004439GGAMKSFKGYLTEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGIKSIAKLQGQKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSASGDVMSHIDQQGRRWTSISDLKETSRWTKFGAVEKSLEKMFDPLVKKYLKKGEFQENATVWELWRMAERKVDKKTMGLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTDLSWDEQIVNNIKVKTAHFFKLKLLRGKNSLSPEQEELIEFAKSKGWKTKMWDAAIGLEAYTRQVAKKELGK
Ga0209709_1000330521F006919N/AMKSFVQHLKEFAINSTSDIVFEVGSQGQGSSALKIPISPSMFKRIWPDTIRATVFHSTDAENVAGLKRLEGGKKSISGFFSMMASEMEGGIATDGGVVVEMEADILVSSKDDIMSQVDKAGRRWVEMSWFEFALGRNVPAGYNKIERGLNVLIRELVLKYLEPIMGNKARTEPEFYLWGNMKRHLKDSKKLSLVIKDYFDGVEKVLKSNKKVMGEIFYSYAKKRMNDGAWDEQVVNNIKVKKIHVLKDIFDDDNKEALEDISSAYPKPAMIKSWDSFKDVETYTKKVAKTELSK
Ga0209709_100033056F000245GGAGVKPFGTYLKETRLDDKLDKLVHDEIKKRKLAKFPVNATDDIKMRRGKPAFKFPSPNSDMMIHVFLRKMAPSKGQPKGVMAFNYQLEDK
Ga0209709_100033058F002715GGAMPDDQLQSVKLEVGLLKNEVETRGKQIETLLQKLDLTTDKLSQLTVQIIKLNTRQEDYLRHTKSTSSEFKILHTRIGDLYDKQLVMHKEIEERIDRLDQYKSKLMGMIIVVGGVVGTLVAVITGIFLKD
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