Basic Information | |
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Taxon OID | 3300027779 Open in IMG/M |
Scaffold ID | Ga0209709_10003802 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12368 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F005608 | Metagenome / Metatranscriptome | 395 | Y |
F017326 | Metagenome / Metatranscriptome | 241 | N |
F025300 | Metagenome | 202 | Y |
F055786 | Metagenome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209709_100038021 | F017326 | N/A | MNDYEKVKIEINESITSDNFKEHLRKNYHNSYDEYLDDTRGIDLDVFYEENSIPIHELVPKGMTIKEYFGREQRLLRGENISYVKFDKDGYQ |
Ga0209709_1000380211 | F005608 | GGA | MRKATIEVLEEGELIFGSPTTGKWFVRRYEDGKEMGGGFFKTKKEAIVHAREYRNITSE |
Ga0209709_100038025 | F001048 | N/A | MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK |
Ga0209709_100038026 | F055786 | GGA | MICSYCYASQIRQKHDVGHWWNNPPDHAYVCSDKCYTELEKLVKDGTWMDYKPPAIFGRKKKVEEKETIGAITDKQFTGNLE |
Ga0209709_100038029 | F025300 | N/A | MKKINVETLVPNTFKFVARDMDGKVFAFENKPNLATDIACDTWDVKEGKFIQLTNPVFLSEVEGITHSEVSSELGDWRDSLMELNDENLV |
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