NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10003802

Scaffold Ga0209709_10003802


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10003802 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12368
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F005608Metagenome / Metatranscriptome395Y
F017326Metagenome / Metatranscriptome241N
F025300Metagenome202Y
F055786Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100038021F017326N/AMNDYEKVKIEINESITSDNFKEHLRKNYHNSYDEYLDDTRGIDLDVFYEENSIPIHELVPKGMTIKEYFGREQRLLRGENISYVKFDKDGYQ
Ga0209709_1000380211F005608GGAMRKATIEVLEEGELIFGSPTTGKWFVRRYEDGKEMGGGFFKTKKEAIVHAREYRNITSE
Ga0209709_100038025F001048N/AMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK
Ga0209709_100038026F055786GGAMICSYCYASQIRQKHDVGHWWNNPPDHAYVCSDKCYTELEKLVKDGTWMDYKPPAIFGRKKKVEEKETIGAITDKQFTGNLE
Ga0209709_100038029F025300N/AMKKINVETLVPNTFKFVARDMDGKVFAFENKPNLATDIACDTWDVKEGKFIQLTNPVFLSEVEGITHSEVSSELGDWRDSLMELNDENLV
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Biomedical Sciences Research Center "Alexander Fleming"
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