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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10006708 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8808 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003091 | Metagenome / Metatranscriptome | 508 | Y |
| F005749 | Metagenome | 391 | Y |
| F007138 | Metagenome | 357 | Y |
| F012582 | Metagenome / Metatranscriptome | 279 | Y |
| F015796 | Metagenome / Metatranscriptome | 252 | N |
| F055198 | Metagenome / Metatranscriptome | 139 | Y |
| F101492 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000670816 | F007138 | AGGA | MTDIQQDPGIYPSDFKSSSSVQEIQQVFEAYKFYTGRMIGGSKTGYSIQRPNNLILFNANVLMPDYGKVWYGDLNLTEDYLVLKEIAKSLNTTLYVLWESDGRFGDENKPLTALLDKAVWSTDDTKPTKEWYKKSKNKA |
| Ga0209709_100067082 | F055198 | GAGG | MSDFESVACKVLGVILFFVMCILAFQLMGCMCPIPPAPLEYEYIDEVKMENLV |
| Ga0209709_1000670820 | F015796 | AGG | MNRQQMQKYDDTRDRILIREWFKLKGVVLEHGSKYGVDLQGKDYDVEISHLSFDSLWGQWKKENRFRIEIRKRNHYWDGVYNESHTTQFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIPFDIGKDVIKRYEI |
| Ga0209709_100067083 | F012582 | N/A | MTEFHKKLRHLSTTMLHWAEENKIRTKRNGDYEIPQRNGIDWKFDFKFVTKLDSMFADGLDVTLKKNEMKMCNELYSYYSQCYMRK |
| Ga0209709_100067084 | F003091 | AGGAG | MTMLPQKPITKPGEGKQRQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFQIRRKAENGLLKEYRRGVWMTDGNCTAVNSPCRNCE |
| Ga0209709_100067088 | F005749 | AGGAG | MKKSWLLTMSFDEHDGSPNDIKTLYHGRTQRSMVKDMNLFQDMNEHLVLALVEVDEKSTYDKIIDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLAGSLINGDMGYA |
| Ga0209709_100067089 | F101492 | AGGAG | MFRTASELGREFRSEIAPMLKSKGFDLKISSSRKSYYHDGKLGVQIIKVPTNFPVWTSEYSRWNRTKNADRLLDTIEDRIKILISNNNVELETKGDDSIDIRVNVEFGNSIRFIKYETPEEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |