NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10006708

Scaffold Ga0209709_10006708


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10006708 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8808
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F007138Metagenome357Y
F012582Metagenome / Metatranscriptome279Y
F015796Metagenome / Metatranscriptome252N
F055198Metagenome / Metatranscriptome139Y
F101492Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000670816F007138AGGAMTDIQQDPGIYPSDFKSSSSVQEIQQVFEAYKFYTGRMIGGSKTGYSIQRPNNLILFNANVLMPDYGKVWYGDLNLTEDYLVLKEIAKSLNTTLYVLWESDGRFGDENKPLTALLDKAVWSTDDTKPTKEWYKKSKNKA
Ga0209709_100067082F055198GAGGMSDFESVACKVLGVILFFVMCILAFQLMGCMCPIPPAPLEYEYIDEVKMENLV
Ga0209709_1000670820F015796AGGMNRQQMQKYDDTRDRILIREWFKLKGVVLEHGSKYGVDLQGKDYDVEISHLSFDSLWGQWKKENRFRIEIRKRNHYWDGVYNESHTTQFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIPFDIGKDVIKRYEI
Ga0209709_100067083F012582N/AMTEFHKKLRHLSTTMLHWAEENKIRTKRNGDYEIPQRNGIDWKFDFKFVTKLDSMFADGLDVTLKKNEMKMCNELYSYYSQCYMRK
Ga0209709_100067084F003091AGGAGMTMLPQKPITKPGEGKQRQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFQIRRKAENGLLKEYRRGVWMTDGNCTAVNSPCRNCE
Ga0209709_100067088F005749AGGAGMKKSWLLTMSFDEHDGSPNDIKTLYHGRTQRSMVKDMNLFQDMNEHLVLALVEVDEKSTYDKIIDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLAGSLINGDMGYA
Ga0209709_100067089F101492AGGAGMFRTASELGREFRSEIAPMLKSKGFDLKISSSRKSYYHDGKLGVQIIKVPTNFPVWTSEYSRWNRTKNADRLLDTIEDRIKILISNNNVELETKGDDSIDIRVNVEFGNSIRFIKYETPEEK

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