NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10008196

Scaffold Ga0209709_10008196


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10008196 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7801
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007052Metagenome / Metatranscriptome359Y
F028833Metagenome / Metatranscriptome190Y
F032811Metagenome179Y
F039176Metagenome164Y
F101337Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000819610F032811GAGMRVAPGCYFEQEEEEPIDPIRGRKTSANIKEPTYRRRSILEDIPDNYSERIMRLKGTARIVPEREVQTPEGFAVTIAYNKSGYQVIPKEDLKR
Ga0209709_1000819613F007052AGGAMERNETYFVARLLNKGEFLSSEIFESLEEARLWAMRESKLLISDLEMLRSTNVGDICVEIDKHFFGYE
Ga0209709_1000819617F101337AGGMLEILIFGLVIFAVTCLWVLIEERKSPKFLIWFIPLFLILVTSTYLTYTSILGHPKEGVPKKGIYLKHHIDEPDWVYIWVLNEDNIPMGYKLVYSRAVHNSLLGVQGKANEGKFMVLGEDENALGSIDEQEEQGEESRGGFTVGGDISFYEWDFSAAMPPKNITN
Ga0209709_100081963F028833AGGAMWSEAVIDNIARKVAEEPMDDIPQHVIDEERGDMLRQLRKEQAQMEMYDDPYLNWSGHR
Ga0209709_100081968F039176N/AMEIDLSLNRSLEELVSSYFEAHGAGVDIDNDSSETEKSDYYVLENYLSDMGAL
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