NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10010459

Scaffold Ga0209709_10010459


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10010459 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6670
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008914Metagenome326Y
F009992Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100104593F008914AGGAGMADPFNSQVAAQQEAAIEETRKWLRGWDAEQREMVLWILEEEVRHDKLLDFAHEDGGKTKPEKLN
Ga0209709_100104595F009992N/AMNSEVPHDIGYVLGNGPSRDRNETQYDGVTYGCNSIHKEMDVDVLVCMDAWSQFEVIASEYPADHECLFGGYNPMPVGVKPEDLNPPHYGIHYYNPEDRRRATDWYYYATSAADYEKAKAEKYVMSYWKPDCGYVCWVGEGYKIKEVDYGVIPIGDLRPPSGAYALQEALKGGHDRIEVIGFDSIADVFSNTGNEQRPEFELPSFPILQERMRKWLNYYRTVTEHYNEIEIIWHHKEENN
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