NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10010984

Scaffold Ga0209709_10010984


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10010984 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6466
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1001098413F074050N/AMKKSDIKIIIREEISNFLKTEAPVEKTVQKGTVTDNARLTMILSSLGKRAKGSFQKRKVVSQVIMSLASALAITPTEVLRAYMDYKKDAKGDASKEVKAD
Ga0209709_1001098414F077815N/AMQGNDLKYRLKQIIREEVFSALEEDTYKFGTLADPKKMDPNDPMVKVNGFASMNRSSIRSQIVDRLSGALATSKDAARGGNESYQAYKQLQDLISTDGILYKLIGAELDVANELESTRLKGGRRTIPIPKQ
Ga0209709_100109842F092748N/AMAKYTPSLNMTAGIDRKKVDHLGKNYASIDFEIKEHVDPTNFKYAKMKPIVGTFIIGNKRVDVTYAELTHISRTCHQAAQQCDMAYRIGKWGRPRTRLPY
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